Publications

2023

• Resisting Eugenics and Racial Capitalism: Passover and the Tradition of Shifra and Puah

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2022

• Intelligence Under Racial Capitalism: From Eugenics to Standardized Testing and Online Learning

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• Probabilistic Inference with Polymerizing Biochemical Circuits

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2020

• Entrepreneurial Science

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2019

• Metrics of Inequality: The Concentration of Resources in the U.S. Biomedical Elite

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2018

• Embodying probabilistic inference in biochemical circuits

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2017

• Manufacturing an Artificial Intelligence Revolution

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2016

• Probabilistic adaptation in changing microbial environments

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• Cheerleading with an agenda: how the press covers science

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• Universities have turned over hundreds of patents to patent trolls

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• High-fat diet enhances stemness and tumorigenicity of intestinal progenitors

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2015

• Transformation of the intestinal epithelium by the ​MSI2 RNA-binding protein

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• Quantitative visualization of alternative exon expression from RNA-seq data

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2014

• Musashi proteins are post-transcriptional regulators of the epithelial-luminal cell state

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• Functional and computational analysis of RNA-binding proteins and their roles in cancer

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• Rapid transcriptional response to physiological neuronal activity in vivo revealed by transcriptome sequencing

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2013

• Against storytelling of scientific results

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• Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system

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2010

• Analysis and design of RNA sequencing experiments for identifying isoform regulation

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2009

• Who Owns Molecular Biology?

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• Noam Chomsky on Where Artificial Intelligence Went Wrong

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2008

• Modeling Semantic Cognition as Logical Dimensionality Reduction

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2007

• Pellet: A practical OWL-DL reasoner

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2006

• Belief Base Revision For Expressive Description Logics

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• Social Network-based Trust in Prioritized Default Logic

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2005

• Towards a Nonmonotonic Extension to OWL

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• Representing Web Service Policies in OWL-DL

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2003

• Use of Lisp in Semantic Web Applications

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